Transcript: ENSDART00000134259.2 hdlbpa-203

Description

high density lipoprotein binding protein a [Source:ZFIN;Acc:ZDB-GENE-030131-2032]

Gene Synonyms

HBP, cb591, cb811, hdlbp, wu:fb36d01, wu:fb94h08, wu:fc23d06, wu:fc75h07

Location

About this transcript

This transcript has 10 exons, is annotated with 30 domains and features, is associated with 117 variant alleles and maps to 54 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000011863.10	hdlbpa-201	5109	1272aa	ENSDARP00000017412.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R9Y8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134259.2	hdlbpa-203	1495	433aa	ENSDARP00000117710.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDS1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133439.2	hdlbpa-202	823	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 1,495 bps, Translation length: 433 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000134259.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.