Transcript: ENSDART00000134215.2 grik1a-202

Description

glutamate ionotropic receptor kainate type subunit 1 [Source:HGNC Symbol;Acc:HGNC:4579]

Location

Chromosome 10: 25,464,220-25,570,647 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 1299 variant alleles and maps to 65 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069139.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000147089.3	grik1a-205	3192	904aa	ENSDARP00000118019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGN5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000007778.10	grik1a-201	3874	867aa	ENSDARP00000004703.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000134215.2	grik1a-202	747	207aa	ENSDARP00000119664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136989.2	grik1a-203	756	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000140023.2	grik1a-204	752	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000147876.2	grik1a-206	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 747 bps, Translation length: 207 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000134215.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000134215.2 grik1a-202

Summary

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Transcript: ENSDART00000134215.2 grik1a-202

Summary

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