Transcript: ENSDART00000134151.2 cacna1fb-202

Description

calcium channel, voltage-dependent, L type, alpha 1F subunit [Source:ZFIN;Acc:ZDB-GENE-031104-1]

Gene Synonyms

ZfCav1.4, cacna1f

Location

About this transcript

This transcript has 40 exons, is annotated with 79 domains and features, is associated with 1323 variant alleles and maps to 132 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000041564.7	cacna1fb-201	7710	2065aa	ENSDARP00000041563.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QH36	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134151.2	cacna1fb-202	4835	1612aa	ENSDARP00000121451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R2C1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000136403.2	cacna1fb-203	1032	313aa	ENSDARP00000120225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCR5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 40, Coding exons: 40, Transcript length: 4,835 bps, Translation length: 1,612 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000134151.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.