Transcript: ENSDART00000133942.2 STUB1-201

Description

STIP1 homology and U-Box containing protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2963]

Location

Chromosome 24: 39,656,834-39,661,985 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 368 variant alleles and maps to 99 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045228.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145075.3	STUB1-202	1514	287aa	ENSDARP00000118937.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q8K3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000066500.5	STUB1-204	855	284aa	ENSDARP00000066499.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NGW2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000148089.3	STUB1-203	807	161aa	ENSDARP00000114876.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133942.2	STUB1-201	539	74aa	ENSDARP00000121736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 539 bps, Translation length: 74 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000133942.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133942.2 STUB1-201

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Transcript: ENSDART00000133942.2 STUB1-201

Summary

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