Transcript: ENSDART00000133858.2 actn1-203

Description

actinin, alpha 1 [Source:NCBI gene (formerly Entrezgene);Acc:560400]

Location

Chromosome 13: 36,321,431-36,330,899 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 6 variant alleles and maps to 146 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007219.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140243.3	actn1-205	3981	902aa	ENSDARP00000123299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JHU4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000100217.5	actn1-201	3664	902aa	ENSDARP00000090990.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JHU4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133740.3	actn1-202	3658	902aa	ENSDARP00000120755.1	Nonsense mediated decay	B8JHU4	-
ENSDART00000133858.2	actn1-203	993	209aa	ENSDARP00000123185.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135741.2	actn1-204	932	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 993 bps, Translation length: 209 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000133858.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133858.2 actn1-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000133858.2 actn1-203

Summary

About Us

Get help

Our sister sites

Follow us