Transcript: ENSDART00000133766.2 pappab-202

Description

pregnancy-associated plasma protein A, pappalysin 1b [Source:ZFIN;Acc:ZDB-GENE-060526-71]

Gene Synonyms

si:ch211-196f15.1

Location

Chromosome 5: 63,932,711-63,953,722 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 450 variant alleles and maps to 134 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059858.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000083684.6	pappab-201	5091	1624aa	ENSDARP00000078119.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5Q4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000135014.3	pappab-203	4821	1606aa	ENSDARP00000118115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0R0F2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000133766.2	pappab-202	599	200aa	ENSDARP00000123152.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QEV4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 599 bps, Translation length: 200 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000133766.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133766.2 pappab-202

Summary

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Transcript: ENSDART00000133766.2 pappab-202

Summary

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