Transcript: ENSDART00000133708.4 arhgef4-202

Description

Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]

Location

Chromosome 2: 16,198,735-16,254,782 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 24 domains and features, is associated with 1213 variant alleles and maps to 282 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000012914.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000057216.8	arhgef4-201	10438	3063aa	ENSDARP00000057215.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FAH9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000152031.4	arhgef4-203	3431	519aa	ENSDARP00000126484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000133708.4	arhgef4-202	2917	621aa	ENSDARP00000121185.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000165953.2	arhgef4-204	1722	573aa	ENSDARP00000140976.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000173758.2	arhgef4-205	162	53aa	ENSDARP00000142763.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,917 bps, Translation length: 621 residues

Version

ENSDART00000133708.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133708.4 arhgef4-202

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Transcript: ENSDART00000133708.4 arhgef4-202

Summary

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