Transcript: ENSDART00000133549.3 NIFK-202

Description

nucleolar protein interacting with the FHA domain of MKI67 [Source:ZFIN;Acc:ZDB-GENE-021231-4]

Location

About this transcript

This transcript has 4 exons, is associated with 193 variant alleles and maps to 201 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000059549.6	NIFK-201	1344	269aa	ENSDARP00000059548.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JIY8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133060.2	NIFK-203	524	145aa	ENSDARP00000114443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145223.2	NIFK-204	792	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000133549.3	NIFK-202	809	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 809 bps,

Version

ENSDART00000133549.3

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.