Transcript: ENSDART00000133529.3 opn8c-202

Description

opsin 8, group member c [Source:ZFIN;Acc:ZDB-GENE-040724-51]

Location

About this transcript

This transcript has 3 exons, is annotated with 30 domains and features, is associated with 173 variant alleles and maps to 124 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000063831.4	opn8c-201	5863	398aa	ENSDARP00000063830.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R302	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133529.3	opn8c-202	1027	342aa	ENSDARP00000122580.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,027 bps, Translation length: 342 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000133529.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.