Transcript: ENSDART00000133421.2 RABGEF1-201

Description

RAB guanine nucleotide exchange factor (GEF) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1486]

Location

Chromosome 10: 32,866,450-32,877,350 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 635 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000014430.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000018977.7	RABGEF1-203	5252	502aa	ENSDARP00000016779.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P6Y4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138243.3	RABGEF1-202	3279	502aa	ENSDARP00000112905.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P6Y4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133421.2	RABGEF1-201	634	212aa	ENSDARP00000120214.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 634 bps, Translation length: 212 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000133421.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133421.2 RABGEF1-201

Summary

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Transcript: ENSDART00000133421.2 RABGEF1-201

Summary

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