Transcript: ENSDART00000133358.3 ssuh2rs1-202

Description

ssu-2 homolog, related sequence 1 [Source:ZFIN;Acc:ZDB-GENE-060929-994]

Location

Chromosome 8: 7,311,478-7,336,148 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 4 domains and features, is associated with 560 variant alleles and maps to 56 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000063292.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000092347.7	ssuh2rs1-201	1466	361aa	ENSDARP00000086779.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08C76	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192380.1	ssuh2rs1-204	5280	361aa	ENSDARP00000151445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08C76	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133358.3	ssuh2rs1-202	912	212aa	ENSDARP00000122839.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145322.2	ssuh2rs1-203	494	59aa	ENSDARP00000113094.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 912 bps, Translation length: 212 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000133358.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000133358.3 ssuh2rs1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000133358.3 ssuh2rs1-202

Summary

About Us

Get help

Our sister sites

Follow us