Transcript: ENSDART00000133228.2 ctdsplb-201

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b [Source:ZFIN;Acc:ZDB-GENE-060929-488]

Gene Synonyms

wu:fd18d04, zgc:154102

Location

About this transcript

This transcript has 2 exons, is associated with 350 variant alleles and maps to 53 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000171397.2	ctdsplb-204	1218	266aa	ENSDARP00000141942.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IYK3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145670.3	ctdsplb-202	918	113aa	ENSDARP00000120623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JL79	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146600.3	ctdsplb-203	896	124aa	ENSDARP00000117659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JL80	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133228.2	ctdsplb-201	469	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 469 bps,

Version

ENSDART00000133228.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.