Transcript: ENSDART00000133157.3 cntn1b-202

Description

contactin 1b [Source:ZFIN;Acc:ZDB-GENE-041210-236]

Gene Synonyms

si:dkey-240a12.2

Location

About this transcript

This transcript has 24 exons, is annotated with 61 domains and features, is associated with 485 variant alleles and maps to 304 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000133157.3	cntn1b-202	4786	1039aa	ENSDARP00000116014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5TYT0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000067166.6	cntn1b-201	4736	1031aa	ENSDARP00000067165.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R1C8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 4,786 bps, Translation length: 1,039 residues

Version

ENSDART00000133157.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.