Transcript: ENSDART00000133080.2 TRAPPC6A-204

Description

trafficking protein particle complex subunit 6B, like [Source:ZFIN;Acc:ZDB-GENE-040426-1602]

Gene Synonyms

zgc:66304, zgc:85773

Location

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 125 variant alleles and maps to 81 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000043492.6	TRAPPC6A-202	1406	161aa	ENSDARP00000043491.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NUY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133080.2	TRAPPC6A-204	430	102aa	ENSDARP00000119425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147796.2	TRAPPC6A-201	326	77aa	ENSDARP00000121289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137675.3	TRAPPC6A-203	726	88aa	ENSDARP00000124070.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 430 bps, Translation length: 102 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000133080.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.