Transcript: ENSDART00000132968.2 ATP1A1-202

Description

ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-001212-1]

Location

Chromosome 1: 1,730,392-1,731,484 forward strand.

About this transcript

This transcript has 2 exons, is associated with 328 variant alleles and maps to 137 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000002791.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000081047.5	ATP1A1-206	3506	1028aa	ENSDARP00000075490.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9DGL6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135994.2	ATP1A1-204	867	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000137184.2	ATP1A1-203	652	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000136381.2	ATP1A1-201	416	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000147682.2	ATP1A1-205	313	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000132968.2	ATP1A1-202	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 772 bps,

Version

ENSDART00000132968.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000132968.2 ATP1A1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000132968.2 ATP1A1-202

Summary

About Us

Get help

Our sister sites

Follow us