Transcript: ENSDART00000132948.2 atp11a-202

Description

ATPase phospholipid transporting 11A [Source:ZFIN;Acc:ZDB-GENE-090311-52]

Gene Synonyms

si:dkey-251i8.1

Location

About this transcript

This transcript has 2 exons, is associated with 244 variant alleles and maps to 83 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000150029.3	atp11a-204	10460	1177aa	ENSDARP00000124793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W2B0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000193233.1	atp11a-205	3456	1151aa	ENSDARP00000156520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000145117.2	atp11a-203	3375	1124aa	ENSDARP00000115894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000040284.8	atp11a-201	1917	638aa	ENSDARP00000040283.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000132948.2	atp11a-202	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 462 bps,

Version

ENSDART00000132948.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.