Transcript: ENSDART00000132946.2 tmtops3b-202

Description

teleost multiple tissue opsin 3b [Source:ZFIN;Acc:ZDB-GENE-091204-311]

Location

About this transcript

This transcript has 2 exons, is annotated with 33 domains and features, is associated with 228 variant alleles and maps to 35 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123195.3	tmtops3b-201	1074	357aa	ENSDARP00000105609.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0N9NKH0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132946.2	tmtops3b-202	613	205aa	ENSDARP00000117519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 613 bps, Translation length: 205 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000132946.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.