Transcript: ENSDART00000132925.3 zgc:112977-202

Description

zgc:112977 [Source:ZFIN;Acc:ZDB-GENE-050327-98]

Location

Chromosome 22: 2,403,068-2,405,774 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 11 domains and features, is associated with 215 variant alleles and maps to 274 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000071741.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000132925.3	zgc:112977-202	521	122aa	ENSDARP00000122515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DZB0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132569.2	zgc:112977-201	691	160aa	ENSDARP00000114029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DZB1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 521 bps, Translation length: 122 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000132925.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000132925.3 zgc:112977-202

Summary

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Transcript: ENSDART00000132925.3 zgc:112977-202

Summary

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