Transcript: ENSDART00000132884.2 cxxc5a-201

Description

CXXC finger protein 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3178]

Gene Synonyms

cxxc5, si:ch211-113h10.2, wid, wu:fc29g12

Location

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 1326 variant alleles and maps to 227 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000180820.1	cxxc5a-202	1078	284aa	ENSDARP00000147051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M3AX14	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000132884.2	cxxc5a-201	2667	283aa	ENSDARP00000112750.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FC24	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 2,667 bps, Translation length: 283 residues

Version

ENSDART00000132884.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.