Transcript: ENSDART00000132879.2 ndrg3a-203

Description

ndrg family member 3a [Source:ZFIN;Acc:ZDB-GENE-980526-124]

Gene Synonyms

fc04h03, ndr3, ndrg3, wu:fc04h03

Location

Chromosome 11: 25,129,013-25,138,899 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 8 domains and features, is associated with 307 variant alleles and maps to 147 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000013087.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000016181.11	ndrg3a-201	1951	362aa	ENSDARP00000005974.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SY38	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000190058.1	ndrg3a-207	3937	397aa	ENSDARP00000157531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000128705.3	ndrg3a-202	3832	362aa	ENSDARP00000105614.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FEZ7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000183700.1	ndrg3a-206	3685	399aa	ENSDARP00000151480.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000132879.2	ndrg3a-203	1162	199aa	ENSDARP00000123158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000147546.3	ndrg3a-204	998	256aa	ENSDARP00000119922.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000167073.2	ndrg3a-205	207	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,162 bps, Translation length: 199 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000132879.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000132879.2 ndrg3a-203

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000132879.2 ndrg3a-203

Summary

About Us

Get help

Our sister sites

Follow us