Transcript: ENSDART00000132829.3 PATJ-202

Description

PATJ crumbs cell polarity complex component [Source:ZFIN;Acc:ZDB-GENE-030616-129]

Location

About this transcript

This transcript has 45 exons, is annotated with 104 domains and features, is associated with 3511 variant alleles and maps to 584 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000191880.1	PATJ-203	6663	1914aa	ENSDARP00000157175.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2B8K6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132829.3	PATJ-202	6560	1831aa	ENSDARP00000116882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXN3	-
ENSDART00000036467.8	PATJ-204	5496	1831aa	ENSDARP00000035306.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXN3	-
ENSDART00000145208.2	PATJ-201	553	98aa	ENSDARP00000122825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 45, Coding exons: 44, Transcript length: 6,560 bps, Translation length: 1,831 residues

Version

ENSDART00000132829.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.