Transcript: ENSDART00000132790.4 spty2d1-203

Description

SPT2 chromatin protein domain containing 1 [Source:NCBI gene;Acc:337191]

Gene Synonyms

wu:fb01d08, zgc:111826

Location

Chromosome 25: 24,237,449-24,240,797 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 91 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000033889.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000073527.5	spty2d1-202	2876	629aa	ENSDARP00000068017.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QNL9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000046349.8	spty2d1-201	6717	632aa	ENSDARP00000046348.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R3H5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000132790.4	spty2d1-203	760	126aa	ENSDARP00000119198.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8W5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151868.2	spty2d1-204	866	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 760 bps, Translation length: 126 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000132790.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000132790.4 spty2d1-203

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Transcript: ENSDART00000132790.4 spty2d1-203

Summary

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