Transcript: ENSDART00000132651.3 U2SURP-201

Description

U2 snRNP-associated SURP domain containing [Source:ZFIN;Acc:ZDB-GENE-070912-400]

Location

Chromosome 2: 26,623,377-26,642,944 reverse strand.

About this transcript

This transcript has 25 exons, is annotated with 51 domains and features, is associated with 420 variant alleles and maps to 297 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000061490.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000087714.7	U2SURP-204	3295	968aa	ENSDARP00000082147.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000132651.3	U2SURP-201	3913	923aa	ENSDARP00000122954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000132854.2	U2SURP-203	829	276aa	ENSDARP00000112741.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000135261.2	U2SURP-202	719	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 3,913 bps, Translation length: 923 residues

Version

ENSDART00000132651.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000132651.3 U2SURP-201

Summary

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Transcript: ENSDART00000132651.3 U2SURP-201

Summary

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