Transcript: ENSDART00000132312.2 tncb-203

Description

tenascin Cb [Source:ZFIN;Acc:ZDB-GENE-980526-104]

Gene Synonyms

etID309720.5, tenc, tnc, wu:fk04d02

Location

Chromosome 5: 28,570,909-28,575,812 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 289 variant alleles and maps to 18 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000021948.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000131729.3	tncb-202	6899	1811aa	ENSDARP00000114191.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QYE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179736.1	tncb-207	6783	1720aa	ENSDARP00000146747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHI1	-
ENSDART00000190782.1	tncb-208	6780	1719aa	ENSDARP00000144742.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000193585.1	tncb-209	6347	1720aa	ENSDARP00000154936.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHI1	-
ENSDART00000026107.9	tncb-201	6229	1811aa	ENSDARP00000010247.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QYE2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137717.3	tncb-205	5384	1720aa	ENSDARP00000116907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHI1	-
ENSDART00000132312.2	tncb-203	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000147687.3	tncb-206	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000137480.2	tncb-204	524	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 763 bps,

Version

ENSDART00000132312.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000132312.2 tncb-203

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Transcript: ENSDART00000132312.2 tncb-203

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