Transcript: ENSDART00000132290.2 hnrpkl-202

Description

heteroous nuclear ribonucleoprotein K, like [Source:ZFIN;Acc:ZDB-GENE-040426-1923]

Gene Synonyms

wu:fc19f05, wu:fc48a08, wu:fc84b09, wu:fd16g02, zgc:56206

Location

Chromosome 5: 55,621,174-55,625,197 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 102 variant alleles and maps to 92 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007034.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000133156.3	hnrpkl-203	2288	431aa	ENSDARP00000116598.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JLJ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000176341.2	hnrpkl-206	3357	431aa	ENSDARP00000144315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JLJ8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000005671.10	hnrpkl-201	3324	420aa	ENSDARP00000008648.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6PB84	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000139236.2	hnrpkl-204	1582	84aa	ENSDARP00000114704.1	Nonsense mediated decay	-	-
ENSDART00000142912.3	hnrpkl-205	711	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000132290.2	hnrpkl-202	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 528 bps,

Version

ENSDART00000132290.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000132290.2 hnrpkl-202

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Transcript: ENSDART00000132290.2 hnrpkl-202

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