Transcript: ENSDART00000132147.2 racgap1-202

Description

Rac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]

Gene Synonyms

ogr, ogre, wu:fb92c08

Location

Chromosome 23: 33,763,958-33,775,145 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 5 variant alleles and maps to 113 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000015460.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000027959.10	racgap1-201	2719	654aa	ENSDARP00000020703.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P3H8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000160116.2	racgap1-204	5972	639aa	ENSDARP00000141431.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IZK0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000132147.2	racgap1-202	1389	439aa	ENSDARP00000116910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHH8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000143638.2	racgap1-203	845	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,389 bps, Translation length: 439 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000132147.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000132147.2 racgap1-202

Summary

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Transcript: ENSDART00000132147.2 racgap1-202

Summary

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