Transcript: ENSDART00000132107.2 s100s-201

Description

S100 calcium binding protein S [Source:ZFIN;Acc:ZDB-GENE-040822-31]

Location

Chromosome 19: 7,604,527-7,608,519 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 11 domains and features, is associated with 255 variant alleles and maps to 334 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000036773.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142955.2	s100s-203	1371	122aa	ENSDARP00000115567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WW32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000140083.2	s100s-202	932	114aa	ENSDARP00000113367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WW34	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000132107.2	s100s-201	531	93aa	ENSDARP00000121340.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 531 bps, Translation length: 93 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000132107.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000132107.2 s100s-201

Summary

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Transcript: ENSDART00000132107.2 s100s-201

Summary

About Us

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