Transcript: ENSDART00000131875.3 atrn-202

Description

attractin [Source:ZFIN;Acc:ZDB-GENE-090312-21]

Gene Synonyms

si:dkey-259n11.1

Location

About this transcript

This transcript has 29 exons, is annotated with 54 domains and features, is associated with 3286 variant alleles and maps to 158 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000089528.7	atrn-201	4740	1383aa	ENSDARP00000083961.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB13A8Y1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000131875.3	atrn-202	4973	1345aa	ENSDARP00000118575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JI13	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 4,973 bps, Translation length: 1,345 residues

Version

ENSDART00000131875.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.