Transcript: ENSDART00000131872.2 prpf38b-202

Description

pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]

Location

About this transcript

This transcript has 6 exons, is associated with 488 variant alleles and maps to 139 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000075080.6	prpf38b-201	2188	501aa	ENSDARP00000069565.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131872.2	prpf38b-202	1229	172aa	ENSDARP00000112649.1	Nonsense mediated decay	-
ENSDART00000133598.3	prpf38b-203	777	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000135665.2	prpf38b-204	777	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000137126.2	prpf38b-205	731	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,229 bps, Translation length: 172 residues

Version

ENSDART00000131872.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.