Transcript: ENSDART00000131637.2 PRRX1-202

Description

paired related homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9033]

Location

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 297 variant alleles and maps to 124 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000061588.6	PRRX1-201	2766	245aa	ENSDARP00000061587.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P295	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131637.2	PRRX1-202	943	212aa	ENSDARP00000115613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 943 bps, Translation length: 212 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000131637.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.