Transcript: ENSDART00000131582.3 cbx3b-201

Description

chromobox homolog 3b [Source:ZFIN;Acc:ZDB-GENE-070628-2]

Gene Synonyms

fj44f08, wu:fj44f08

Location

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 157 variant alleles and maps to 267 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000131582.3	cbx3b-201	2678	194aa	ENSDARP00000123074.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDB7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136235.2	cbx3b-202	757	194aa	ENSDARP00000115213.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDB7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139737.2	cbx3b-203	466	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,678 bps, Translation length: 194 residues

Version

ENSDART00000131582.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.