Transcript: ENSDART00000131508.3 col9a1b-201

Description

collagen, type IX, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2410]

Gene Synonyms

cb339, col9a1, sb:cb339, wu:fa12a12, wu:fa12d02, wu:fc22c08, wu:fc38d08, zgc:85892

Location

About this transcript

This transcript has 32 exons, is annotated with 37 domains and features, is associated with 1080 variant alleles and maps to 171 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000131508.3	col9a1b-201	2805	681aa	ENSDARP00000121882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A4T6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000168795.2	col9a1b-202	2297	669aa	ENSDARP00000133366.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 32, Coding exons: 32, Transcript length: 2,805 bps, Translation length: 681 residues

Version

ENSDART00000131508.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.