Transcript: ENSDART00000131429.3 ITGB5-202

Description

integrin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6022]

Gene Synonyms

wu:fi30h12

Location

Chromosome 9: 22,677,503-22,679,833 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 232 variant alleles and maps to 59 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000012942.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000080005.6	ITGB5-205	3362	823aa	ENSDARP00000074455.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000138148.2	ITGB5-203	3427	807aa	ENSDARP00000117973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000101756.5	ITGB5-204	3413	802aa	ENSDARP00000092532.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000131429.3	ITGB5-202	767	138aa	ENSDARP00000116261.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145263.2	ITGB5-201	375	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 767 bps, Translation length: 138 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000131429.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000131429.3 ITGB5-202

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Transcript: ENSDART00000131429.3 ITGB5-202

Summary

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