Transcript: ENSDART00000131422.2 cep43-202

Description

centrosomal protein 43 [Source:ZFIN;Acc:ZDB-GENE-090417-1]

Gene Synonyms

fgfr1op, zgc:86782

Location

Chromosome 20: 30,578,967-30,583,267 forward strand.

About this transcript

This transcript has 5 exons, is associated with 230 variant alleles and maps to 78 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000003058.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000010494.10	cep43-201	1668	511aa	ENSDARP00000011529.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000159485.2	cep43-205	2319	487aa	ENSDARP00000139051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IW74	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000153066.2	cep43-204	695	213aa	ENSDARP00000127161.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000137007.2	cep43-203	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000131422.2	cep43-202	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 619 bps,

Version

ENSDART00000131422.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000131422.2 cep43-202

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Transcript: ENSDART00000131422.2 cep43-202

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