Transcript: ENSDART00000131361.2 kcnip3b-203

Description

Kv channel interacting protein 3b, calsenilin [Source:ZFIN;Acc:ZDB-GENE-040426-1752]

Location

Chromosome 10: 20,661,225-20,669,635 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 19 domains and features, is associated with 519 variant alleles and maps to 96 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000017880.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166540.2	kcnip3b-205	2337	259aa	ENSDARP00000130174.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000124751.4	kcnip3b-202	1158	259aa	ENSDARP00000106407.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PBP8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000064581.7	kcnip3b-201	780	259aa	ENSDARP00000064580.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000131361.2	kcnip3b-203	748	156aa	ENSDARP00000119344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137322.2	kcnip3b-204	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 748 bps, Translation length: 156 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000131361.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

dotter confirmed [Definitions]

Transcript: ENSDART00000131361.2 kcnip3b-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000131361.2 kcnip3b-203

Summary

About Us

Get help

Our sister sites

Follow us