Transcript: ENSDART00000131334.2 clasp1a-202

Description

cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]

Gene Synonyms

si:dkey-219c10.5

Location

Chromosome 9: 38,279,383-38,286,788 forward strand.

About this transcript

This transcript has 5 exons, is associated with 335 variant alleles and maps to 9 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010280.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102445.5	clasp1a-201	4608	1535aa	ENSDARP00000093222.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R253	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000137955.3	clasp1a-203	6762	1492aa	ENSDARP00000114337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHM7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000142853.2	clasp1a-204	190	63aa	ENSDARP00000121804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8N8	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000131334.2	clasp1a-202	896	126aa	ENSDARP00000117712.1	Nonsense mediated decay	F1QZJ2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 896 bps, Translation length: 126 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000131334.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000131334.2 clasp1a-202

Summary

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Transcript: ENSDART00000131334.2 clasp1a-202

Summary

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