Transcript: ENSDART00000130434.4 col18a1a-203

Description

collagen type XVIII alpha 1 chain a [Source:ZFIN;Acc:ZDB-GENE-030516-3]

Location

About this transcript

This transcript has 41 exons, is annotated with 73 domains and features, is associated with 1131 variant alleles and maps to 222 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000007058.10	col18a1a-201	5579	1383aa	ENSDARP00000002450.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S8G5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000130434.4	col18a1a-203	6365	1645aa	ENSDARP00000108133.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QJR2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000097295.6	col18a1a-202	5515	1349aa	ENSDARP00000088066.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PS88	-

Summary

Statistics

Exons: 41, Coding exons: 41, Transcript length: 6,365 bps, Translation length: 1,645 residues

Version

ENSDART00000130434.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.