Transcript: ENSDART00000130260.3 HOXC10-201

Description

homeobox C10a [Source:ZFIN;Acc:ZDB-GENE-990415-110]

Location

Chromosome 23: 36,083,617-36,086,594 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 66 variant alleles and maps to 247 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070348.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000184107.1	HOXC10-204	1872	337aa	ENSDARP00000147493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179992.1	HOXC10-202	1769	337aa	ENSDARP00000156025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000053295.7	HOXC10-203	1601	327aa	ENSDARP00000053294.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BE66	-
ENSDART00000130260.3	HOXC10-201	1242	337aa	ENSDARP00000111519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,242 bps, Translation length: 337 residues

Version

ENSDART00000130260.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000130260.3 HOXC10-201

Summary

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Transcript: ENSDART00000130260.3 HOXC10-201

Summary

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