Transcript: ENSDART00000129889.5 IFT140-201

Description

intraflagellar transport 140 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040724-165]

Location

About this transcript

This transcript has 29 exons, is annotated with 24 domains and features, is associated with 3026 variant alleles and maps to 169 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000129889.5	IFT140-201	4885	1445aa	ENSDARP00000111859.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QG20	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000188346.1	IFT140-203	4338	1445aa	ENSDARP00000154811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QG20	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151902.2	IFT140-202	741	153aa	ENSDARP00000126344.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 29, Coding exons: 28, Transcript length: 4,885 bps, Translation length: 1,445 residues

Version

ENSDART00000129889.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.