Transcript: ENSDART00000129844.3 slc12a2-201

Description

solute carrier family 12 member 2 [Source:ZFIN;Acc:ZDB-GENE-040625-53]

Gene Synonyms

little ears, lte, slc12a4, zfnkcc1, zgc:85961, zmp:0000000537

Location

Chromosome 10: 16,225,553-16,264,324 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 779 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104573.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000169885.3	slc12a2-203	7453	1136aa	ENSDARP00000135730.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KTI4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000164647.2	slc12a2-202	3390	1120aa	ENSDARP00000131505.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KGS0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000129844.3	slc12a2-201	1137	271aa	ENSDARP00000105107.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FG36	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,137 bps, Translation length: 271 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000129844.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000129844.3 slc12a2-201

Summary

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Transcript: ENSDART00000129844.3 slc12a2-201

Summary

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