Transcript: ENSDART00000129631.3 herpud1-201

Description

homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 [Source:NCBI gene (formerly Entrezgene);Acc:565499]

Location

Chromosome 18: 17,600,761-17,608,571 forward strand.

About this transcript

This transcript has 8 exons, is associated with 290 variant alleles and maps to 164 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000024314.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000151934.3	herpud1-204	2209	402aa	ENSDARP00000126535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000175258.2	herpud1-205	5657	408aa	ENSDARP00000144135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YAA4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000151850.3	herpud1-203	1243	342aa	ENSDARP00000126498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000129631.3	herpud1-201	2043	44aa	ENSDARP00000126459.1	Nonsense mediated decay	-	-
ENSDART00000141465.2	herpud1-202	618	120aa	ENSDARP00000126555.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 2,043 bps, Translation length: 44 residues

Version

ENSDART00000129631.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000129631.3 herpud1-201

Summary

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Transcript: ENSDART00000129631.3 herpud1-201

Summary

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