Transcript: ENSDART00000129484.4 ush1c-202

Description

Usher syndrome 1C [Source:ZFIN;Acc:ZDB-GENE-060312-41]

Gene Synonyms

harmonin, zgc:136806

Location

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 368 variant alleles and maps to 77 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000121791.4	ush1c-201	1915	548aa	ENSDARP00000104974.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q29RC0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000182843.1	ush1c-204	1699	545aa	ENSDARP00000151717.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QAW7	-
ENSDART00000131993.3	ush1c-203	977	257aa	ENSDARP00000114530.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QEB2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000129484.4	ush1c-202	975	256aa	ENSDARP00000104456.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EZG9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 975 bps, Translation length: 256 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000129484.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.