Transcript: ENSDART00000129022.4 foxp1a-202

Description

forkhead box P1a [Source:ZFIN;Acc:ZDB-GENE-060929-624]

Gene Synonyms

im:7146611, wu:fb97f01, zgc:154010

Location

Chromosome 23: 10,638,009-10,722,700 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 31 domains and features, is associated with 998 variant alleles and maps to 215 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000004843.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000129022.4	foxp1a-202	3042	637aa	ENSDARP00000107924.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q4T2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000189721.1	foxp1a-206	6526	638aa	ENSDARP00000146482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q1R5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000104985.6	foxp1a-201	1449	433aa	ENSDARP00000095755.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BX8	-
ENSDART00000177571.2	foxp1a-205	1305	433aa	ENSDARP00000144390.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08BX8	-
ENSDART00000146526.2	foxp1a-204	558	162aa	ENSDARP00000112848.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDU4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136509.2	foxp1a-203	470	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 3,042 bps, Translation length: 637 residues

Version

ENSDART00000129022.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000129022.4 foxp1a-202

Summary

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Transcript: ENSDART00000129022.4 foxp1a-202

Summary

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