Transcript: ENSDART00000129020.4 pkd1l2b-203

Description

polycystic kidney disease 1 like 2b [Source:ZFIN;Acc:ZDB-GENE-141222-87]

Gene Synonyms

pkd1l2, si:ch1073-128e6.1, si:ch211-168k15.4, si:ch211-168k15.5

Location

About this transcript

This transcript has 15 exons, is annotated with 31 domains and features, is associated with 5 variant alleles and maps to 119 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000124969.3	pkd1l2b-202	7898	1901aa	ENSDARP00000105814.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F2U9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000129020.4	pkd1l2b-203	3187	1013aa	ENSDARP00000105751.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F436	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000167655.2	pkd1l2b-204	892	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 3,187 bps, Translation length: 1,013 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000129020.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]