Transcript: ENSDART00000128590.3 rdh5-202

Description

retinol dehydrogenase 5 (11-cis/9-cis) [Source:ZFIN;Acc:ZDB-GENE-050208-411]

Gene Synonyms

im:6901729, si:dkey-102c8.5

Location

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 507 variant alleles and maps to 137 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000128590.3	rdh5-202	1321	344aa	ENSDARP00000107807.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXG1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000177475.2	rdh5-203	3995	328aa	ENSDARP00000143810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCW4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000002348.9	rdh5-201	1582	328aa	ENSDARP00000013032.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCW4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,321 bps, Translation length: 344 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000128590.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.