Transcript: ENSDART00000127838.4 PCDH18-201

Description

protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]

Location

About this transcript

This transcript has 4 exons, is annotated with 67 domains and features, is associated with 1 variant allele and maps to 182 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000127838.4	PCDH18-201	5254	1135aa	ENSDARP00000108171.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QRP2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000193663.1	PCDH18-202	4420	1123aa	ENSDARP00000148237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 5,254 bps, Translation length: 1,135 residues

Version

ENSDART00000127838.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.