Transcript: ENSDART00000127317.3 tcof1-201

Description

treacle ribosome biogenesis factor 1 [Source:ZFIN;Acc:ZDB-GENE-141219-12]

Location

About this transcript

This transcript has 9 exons, is annotated with 33 domains and features, is associated with 555 variant alleles and maps to 140 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000127317.3	tcof1-201	2403	628aa	ENSDARP00000106768.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F9D9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000161487.2	tcof1-202	2194	600aa	ENSDARP00000130951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QB70	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,403 bps, Translation length: 628 residues

Version

ENSDART00000127317.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]