Transcript: ENSDART00000126784.3 PTPN4-202

Description

protein tyrosine phosphatase non-receptor type 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6259]

Location

About this transcript

This transcript has 8 exons, is annotated with 18 domains and features, is associated with 430 variant alleles and maps to 67 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125423.4	PTPN4-201	3428	930aa	ENSDARP00000105661.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1MTL1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000000192.10	PTPN4-203	6443	935aa	ENSDARP00000000192.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QFY3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000126784.3	PTPN4-202	653	185aa	ENSDARP00000112064.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 653 bps, Translation length: 185 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000126784.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.