Transcript: ENSDART00000126598.3 PXN-201

Description

paxillin a [Source:ZFIN;Acc:ZDB-GENE-040105-1]

Gene Synonyms

pxn, wu:fw71f12

Location

Chromosome 5: 6,672,870-6,718,120 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 39 domains and features, is associated with 964 variant alleles and maps to 288 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000088590.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000185686.1	PXN-203	1599	532aa	ENSDARP00000148251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000126598.3	PXN-201	2590	530aa	ENSDARP00000104565.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000172480.2	PXN-202	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,590 bps, Translation length: 530 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000126598.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000126598.3 PXN-201

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Transcript: ENSDART00000126598.3 PXN-201

Summary

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