Transcript: ENSDART00000126270.3 hhla2b.1-201

Description

HERV-H LTR-associating 2b, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-131127-591]

Location

About this transcript

This transcript has 6 exons, is annotated with 20 domains and features, is associated with 2 variant alleles and maps to 90 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000155780.3	hhla2b.1-202	1704	378aa	ENSDARP00000129726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WHL3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000126270.3	hhla2b.1-201	1550	342aa	ENSDARP00000109982.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,550 bps, Translation length: 342 residues

Version

ENSDART00000126270.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.